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1. 3.4.21.50 enzyme   protease I
                      achromopeptidase
                      lysyl endopeptidase
                      lysyl bond specific proteinase
                      Achromobacter lyticus alkaline proteinase I
                      Achromobacter proteinase I (also see Comment)

2. 3.4.21.62 enzyme   protease S
                      protease VIII
                      protease XXVII
                      alcalase
                      colistinase
                      esperase
                      kazusase
                      maxatase
                      opticlean
                      savinase
                      subtilisin
                      subtilopeptidase
                      superase
                      thermoase
                      ALK-enzyme
                      SP 266
                      bacillopeptidase A
                      bacillopeptidase B
                      genenase I
                      orientase 10B
                      subtilisin BL
                      subtilisin DY
                      subtilisin E
                      subtilisin GX
                      subtilisin J
                      subtilisin S41
                      subtilisin Sendai
                      (see also comments)
                      alcalase 0.6L
                      alcalase 2.5L
                      bioprase AL 15
                      bioprase APL 30
                      protin A 3L
                      savinase 16.0L
                      savinase 4.0T
                      savinase 8.0L
                      thermoase PC 10
                      Bacillus subtilis alkaline proteinase
                      Bacillus subtilis alkaline proteinase bioprase
                      savinase 32.0 L EX

3. 3.4.21.63 enzyme   protease P
                      semi-alkaline protease
                      kyorinase
                      onoprose
                      oryzin
                      promelase
                      prozyme
                      API 21
                      P 5380
                      aspergillopepsin B
                      aspergillopepsin F
                      aspergillopeptidase B
                      onoprose SA
                      prozyme 10
                      seaprose S
                      sumizyme MP
                      Aspergillus alkaline proteinase
                      Aspergillus serine proteinase
                      Aspergillus candidus alkaline proteinase
                      Aspergillus flavus alkaline proteinase
                      Aspergillus melleus alkaline proteinase
                      Aspergillus oryzae alkaline proteinase
                      Aspergillus parasiticus alkaline proteinase
                      Aspergillus soya alkaline proteinase
                      Aspergillus sulphureus alkaline proteinase
                      Aspergillus sydowi alkaline proteinase
                      Aspergillus melleus semi-alkaline proteinase

4. 3.4.21.80 enzyme   protease A
                      Streptomyces griseus protease A
                      proteinase A
                      streptogrisin A
                      Streptomyces griseus proteinase A
                      Streptomyces griseus serine proteinase 3
                      Streptomyces griseus serine proteinase A

5. 3.4.21.87 enzyme   ompT protease
                      protease A
                      protease VII
                      Pla
                      omptin
                      protein a
                      gene ompT proteins

6. 3.4.22.28 enzyme   3C protease
                      protease 3C
                      poliovirus protease 3C
                      rhinovirus protease 3C
                      foot-and-mouth protease 3C
                      tomato ringspot nepovirus 3C-related protease
                      3C proteinase
                      picornain 3C
                      coxsackievirus 3C proteinase
                      cysteine proteinase 3C
                      picornavirus endopeptidase 3C
                      poliovirus proteinase 3C
                      rhinovirus proteinase 3C
                      hepatitis A virus 3C proteinase
                      foot-and-mouth-disease virus proteinase 3C

7. 3.4.22.29 enzyme   2A protease
                      protease 2A
                      poliovirus protease 2A
                      poliovirus protease 2Apro
                      rhinovirus protease 2A
                      2A proteinase
                      picornain 2A
                      proteinase 2Apro
                      picornaviral 2A proteinase
                      picornavirus endopeptidase 2A
                      poliovirus proteinase 2A
                      Y-G proteinase 2A

8. 3.4.22.36 enzyme   protease A
                      protease VII
                      prointerleukin 1beta protease
                      ICE
                      caspase-1
                      interleukin-1beta convertase
                      interleukin 1 converting enzyme
                      interleukin 1beta precursor proteinase
                      interleukin 1beta-converting endopeptidase
                      interleukin 1beta-converting enzyme
                      interleukin-1beta converting enzyme
                      interleukin-1beta precursor proteinase
                      pro-interleukin 1beta proteinase
                      precursor interleukin-1beta converting enzyme

9. 3.4.24.50 enzyme   J protease
                      bothrolysin
                      Bothrops metalloendopeptidase J

10. 3.4.25.1 enzyme   26S protease
                      alkaline protease
                      tricorn protease
                      large multicatalytic protease
                      MCP
                      ingensin
                      macropain
                      prosome
                      proteasome
                      multicatalytic proteinase
                      proteasome organelle
                      tricorn proteinase
                      multicatalytic endopeptidase complex
                      multicatalytic proteinase (complex)
                      proteasome endopeptidase complex

11. 3.4.21.10 enzyme   acrosomal protease
                      acrosin
                      acrozonase
                      acrosin amidase
                      acrosomal proteinase
                      alpha-acrosin
                      beta-acrosin
                      psi-acrosin

12. 3.4.21.102 enzyme   Tsp protease
                      protease Re
                      tail-specific protease
                      C-terminal processing peptidase
                      CtpA gene product (Synechocystis sp.)
                      photosystem II D1 protein processing peptidase

13. 3.4.21.32 enzyme   crab protease I
                      crab protease II
                      brachyurin
                      Uca pugilator collagenolytic proteinase

14. 3.4.21.53 enzyme   PIM1 protease
                      protease La
                      gene lon protease
                      serine protease La
                      ATP-dependent protease La
                      PIM1 proteinase
                      endopeptidase La
                      lon proteinase
                      proteinase La
                      gene lon proteins
                      ATP-dependent lon proteinase
                      ATP-dependent serine proteinase
                      Escherichia coli proteinase La
                      Escherichia coli serine proteinase La

15. 3.4.21.61 enzyme   Kex2 endoprotease
                      Kex2 protease
                      protease KEX2
                      prohormone-processing endoprotease
                      yeast KEX2 protease
                      Kex2-like precursor protein processing endoprotease
                      kexin
                      Kex2 endopeptidase
                      Kex2 endoproteinase
                      Kex2 proteinase
                      endoproteinase Kex2p
                      proprotein convertase
                      proteinase Kex2p
                      proteinase yscF
                      Kex 2p proteinase
                      Kex2-like endoproteinase
                      paired-basic endopeptidase
                      prohormone-processing proteinase
                      andrenorphin-Gly-generating enzyme
                      gene KEX2 dibasic proteinase
                      prohormone-processing KEX2 proteinase
                      yeast cysteine proteinase F (misleading)

16. 3.4.21.70 enzyme   pancreatic protease E
                      CBPP
                      proteinase E
                      cholesterol-binding proteinase
                      pancreas E proteinase
                      pancreatic endopeptidase E
                      pancreatic proteinase E
                      cholesterol-binding pancreatic proteinase
                      cholesterol-binding serine proteinase

17. 3.4.21.72 enzyme   IgA protease
                      immunoglobulin A protease
                      IgA proteinase
                      IgA-specific proteinase
                      immunoglobulin A proteinase
                      IgA-specific serine endopeptidase

18. 3.4.21.83 enzyme   protease II
                      oligopeptidase B
                      Escherichia coli alkaline proteinase II

19. 3.4.21.92 enzyme   Clp protease
                      caseinolytic protease
                      protease Ti
                      ATP-dependent Clp protease
                      ClpP
                      endopeptidase Clp
                      endopeptidase Ti

20. 3.4.22.10 enzyme   Streptococcus protease
                      streptopain
                      Streptococcus peptidase A
                      streptococcal cysteine proteinase

21. 3.4.22.50 enzyme   AcNPV protease
                      BmNPV protease
                      NPV protease
                      nucleopolyhedrosis virus protease
                      baculovirus cathepsin
                      viral cathepsin
                      V-cath endopeptidase

22. 3.4.23.16 enzyme   gag protease
                      HIV aspartyl protease
                      HIV-1 protease
                      HIV-2 protease
                      human immunodeficiency virus type 1 protease
                      retroproteinase
                      HIV proteinase
                      HIV-1 retropepsin

23. 3.4.23.20 enzyme   acid protease A
                      penicillopepsin
                      peptidase A
                      Penicillium aspartic proteinase
                      Penicillium caseicolum aspartic proteinase
                      Penicillium citrinum acid proteinase
                      Penicillium citrinum aspartic proteinase
                      Penicillium cyclopium acid proteinase
                      Penicillium duponti aspartic proteinase
                      Penicillium expansum acid proteinase
                      Penicillium expansum aspartic proteinase
                      Penicillium janthinellum acid proteinase
                      Penicillium janthinellum aspartic proteinase
                      Penicillium roqueforti acid proteinase

24. 3.4.24.13 enzyme   IgA protease
                      IgA1 protease
                      IgA1 proteinase
                      IgA-specific metalloendopeptidase
                      IgA1-specific proteinase
                      immunoglobulin A1 proteinase

25. 3.4.24.3 enzyme   collagen protease
                      azocollase
                      collagenase
                      kollaza
                      metallocollagenase
                      nucleolysin
                      soycollagestin
                      MMP-1
                      MMP-8
                      aspergillopeptidase C
                      clostridiopeptidase A
                      clostridiopeptidase I
                      clostridiopeptidase II
                      collagen peptidase
                      collagenase A
                      collagenase I
                      interstitial collagenase
                      metalloproteinase-1
                      microbial collagenase
                      Achromobacter iophagus collagenase
                      Clostridium histolyticum collagenase
                      collagenase MMP-1
                      matirx metalloproteinase-18
                      matrix metalloproteinase-1
                      matrix metalloproteinase-8
                      Clostridium histolyticum proteinase A

26. 3.4.24.55 enzyme   protease Pi
                      Escherichia coli protease III
                      PTR
                      pitrilysin
                      proteinase Pi
                      Escherichia coli metalloproteinase Pi

27. 3.4.24.56 enzyme   insulin protease
                      insulin-glucagon protease
                      insulin-specific protease
                      IDE
                      insulinase
                      insulysin
                      metalloinsulinase
                      insulin proteinase
                      insulin-degrading enzyme
                      insulin-degrading neutral proteinase

28. 3.4.21.12 enzyme   alpha-lytic protease
                      alpha-lytic endopeptidase
                      alpha-lytic proteinase
                      Myxobacter alpha-lytic proteinase
                      myxobacter alpha-lytic proteinase
                      Mycobacterium sorangium alpha-lytic proteinase
                      Myxobacter 495 alpha-lytic proteinase

29. 3.4.21.3 enzyme   sea anemone protease A
                      metridin
                      Metridium proteinase A
                      sea anemone proteinase A

30. 3.4.21.39 enzyme   skeletal muscle protease
                      mast cell protease I
                      skeletal muscle (SK) protease
                      chymase
                      skin chymotryptic proteinase
                      mast cell serine proteinase, chymase

31. 3.4.21.78 enzyme   T-cell associated protease 1
                      cytotoxic T lymphocyte serine protease
                      CTLA3
                      HuTPS
                      TSP-1
                      granzyme A
                      T-cell derived serine proteinase

32. 3.4.21.81 enzyme   Streptomyces griseus protease B
                      pronase B
                      streptogrisin B
                      serine proteinase B
                      Streptomyces griseus proteinase 1
                      Streptomyces griseus proteinase B
                      Streptomyces griseus serine proteinase B

33. 3.4.21.90 enzyme   Sindbis virus protease
                      togavirin
                      NsP2 proteinase
                      Sindbis virus core protein

34. 3.4.22.14 enzyme   Actinidia anionic protease
                      actinidain
                      actinidin
                      proteinase A2 of Actinidia chinensis

35. 3.4.22.44 enzyme   potyvirus NIa protease
                      nuclear-inclusion-a endopeptidase

36. 3.4.23.18 enzyme   Aspergillus acid protease
                      denapsin
                      proctase
                      aspergillopepsin I
                      carboxyl proteinase
                      proctase P
                      sumizyme AP
                      (see also Comments)
                      Aspergillus acid proteinase
                      Aspergillus aspartic proteinase
                      Aspergillus carboxyl proteinase
                      denapsin XP 271
                      Aspergillus awamori acid proteinase
                      Aspergillus kawachii aspartic proteinase
                      Aspergillus niger acid proteinase
                      Aspergillus saitoi acid proteinase
                      pepsin-type aspartic proteinase

37. 3.4.23.21 enzyme   Rhizopus acid protease
                      neurase
                      rhizopuspepsin
                      Rhizopus acid proteinase
                      Rhizopus aspartic proteinase

38. 3.4.23.23 enzyme   Mucor acid protease
                      Mucor miehei aspartic protease
                      mucorpepsin
                      Fromase 100
                      Fromase 46TL
                      Mucor rennin
                      Mucor acid proteinase
                      Mucor aspartic proteinase
                      Mucor miehei rennin
                      Mucor pusillus emporase
                      Mucor pusillus rennin
                      Mucor miehei aspartic proteinase

39. 3.4.23.26 enzyme   Cladosporium acid protease
                      rhodotorulapepsin
                      Paecilomyces proteinase
                      Cladosporium acid proteinase
                      Cladosporium aspartic proteinase
                      Rhodotorula acid proteinase
                      Rhodotorula aspartic proteinase
                      Rhodotorula glutinis acid proteinase
                      Rhodotorula glutinis aspartic proteinase
                      Rhodotorula glutinis aspartic proteinase II

40. 3.4.23.41 enzyme   yeast aspartic protease 3
                      yapsin 1
                      Yap3 gene product (Saccharomyces cerevisiae)

41. 3.4.24.14 enzyme   procollagen aminoterminal protease
                      aminoprocollagen peptidase
                      procollagen aminopeptidase
                      aminoterminal procollagen peptidase
                      procollagen N-endopeptidase
                      type III procollagen
                      procollagen N-terminal peptidase
                      procollagen N-terminal proteinase
                      type I/II procollagen N-proteinase

42. 3.4.24.32 enzyme   beta-lytic protease
                      achromopeptidase component
                      beta-lytic metalloendopeptidase
                      beta-lytic metalloproteinase
                      Myxobacter beta-lytic proteinase
                      Myxobacter495 beta-lytic proteinase
                      Myxobacterium sorangium beta-lytic proteinase

43. 3.4.24.36 enzyme   promastigote surface protease
                      leishmanolysin
                      Leishmania metalloproteinase
                      glycoprotein gp63
                      promastigote surface endopeptidase
                      surface acid proteinase

44. 3.4.24.77 enzyme   small neutral protease
                      snapalysin
                      SnpA gene product (Streptomyces lividans)

45. 3.4.21.59 enzyme   mast cell protease II
                      rat mast cell protease II
                      tryptase
                      lung tryptase
                      pituitary tryptase
                      skin tryptase
                      tryptase M
                      mast cell tryptase
                      mast cell neutral proteinase
                      mast cell proteinase II
                      mast cell serine proteinase II
                      mast cell serine proteinase tryptase

46. 3.4.22.35 enzyme   Entamoeba histolytica cysteine protease
                      amebapain
                      histolysain
                      histolysin
                      Entamoeba histolytica cysteine proteinase
                      Entamoeba histolytica neutral thiol proteinase

47. 3.4.22.37 enzyme   arginine-specific cysteine protease
                      RGP
                      argingipain
                      Arg-gingipain
                      RGP-1
                      gingipain R
                      gingipain-1
                      arginine-specific gingipain
                      arginine-specific gingivain
                      Arg-gingivain-55 proteinase
                      Arg-gingivain-70 proteinase
                      Arg-gingivain-75 proteinase

48. 3.4.22.52 enzyme   calcium-activated neutral protease I
                      calpain-1
                      mu-calpain

49. 3.4.23.45 enzyme   Down region aspartic protease
                      ASP1
                      beta-secretase
                      memapsin 1
                      beta-site Alzheimer's amyloid precursor protein cleaving enzyme 2  (BACE2)

50. 3.4.24.29 enzyme   Staphylococcus aureus neutral protease
                      aureolysin
                      Staphylococcus aureus neutral proteinase

51. 3.4.24.39 enzyme   Penicillium roqueforti protease II
                      deuterolysin
                      acid metalloproteinase
                      Penicillium roqueforti metalloproteinase
                      neutral proteinase II
                      microbial neutral proteinase II

52. 3.4.24.40 enzyme   Serratia marcescens metalloprotease
                      Pseudomonas aeruginosa alk. protease
                      serralysin
                      Escherichia freundii proteinase
                      Serratia marcescens metalloproteinase
                      Pseudomonas aeruginosa alkaline proteinase
                      Serratia marcescens extracellular proteinase

53. 3.4.21.91 enzyme   Yellow fever virus (flavivirus) protease
                      flavivirin
                      NS2B-3 proteinase

54. 3.4.22.53 enzyme   calcium-activated neutral protease II
                      calpain-2
                      m-calpain
                      milli-calpain

55. 3.4.24.38 enzyme   autolysin, Chlamydomonas cell wall degrading protease
                      gametolysin
                      lysin
                      gamete autolysin
                      Chlamydomonas reinhardtii metalloproteinase
                      gamete lytic enzyme

56. 3.4.24.79 enzyme   insulin-like growth factor binding protein-4 protease
                      pappalysin-1
                      pregnancy-associated plasma protein-A

57. 3.4.24.62 enzyme   bovine neurosecretory granule protease cleaving  pro-oxytocin/neurophysin
                      magnolysin
                      prooxyphysin proteinase
                      pro-oxytocin convertase
                      pro-oxytocin/neurophysin convertase


BiSSCat v1.06.20 http://bisscat.org/
Developed by Masaaki Kotera, Department of Biochemistry, Trinity College Dublin.
Science Foundation of Ireland is gratefully acknowledged.