1.12.98.1 coenzyme F420 hydrogenase
1.5.99.11 5,10-methylenetetrahydromethanopterin reductase
1.5.99.9 methylenetetrahydromethanopterin dehydrogenase

2.1.1.86 tetrahydromethanopterin S-methyltransferase
2.3.1.101 formylmethanofuran-tetrahydromethanopterin N-formyltransferase

6.1.1.9 valine-tRNA ligase

2.4.1.199 beta-mannosylphosphodecaprenol-mannooligosaccharide  6-mannosyltransferase

1.10.3.4 o-aminophenol oxidase
1.11.1.1 NADH peroxidase
1.12.1.2 hydrogen dehydrogenase
1.13.12.1 arginine 2-monooxygenase
1.13.12.11 methylphenyltetrahydropyridine N-monooxygenase
1.13.12.2 lysine 2-monooxygenase
1.14.12.10 benzoate 1,2-dioxygenase
1.14.12.3 benzene 1,2-dioxygenase
1.14.12.4 3-hydroxy-2-methylpyridinecarboxylate dioxygenase
1.14.12.5 5-pyridoxate dioxygenase
1.14.13.1 salicylate 1-monooxygenase
1.14.13.10 2,6-dihydroxypyridine 3-monooxygenase
1.14.13.18 4-hydroxyphenylacetate 1-monooxygenase
1.14.13.19 taxifolin 8-monooxygenase
1.14.13.2 4-hydroxybenzoate 3-monooxygenase
1.14.13.20 2,4-dichlorophenol 6-monooxygenase
1.14.13.22 cyclohexanone monooxygenase
1.14.13.23 3-hydroxybenzoate 4-monooxygenase
1.14.13.24 3-hydroxybenzoate 6-monooxygenase
1.14.13.27 4-aminobenzoate 1-monooxygenase
1.14.13.29 4-nitrophenol 2-monooxygenase
1.14.13.3 4-hydroxyphenylacetate 3-monooxygenase
1.14.13.32 albendazole monooxygenase
1.14.13.33 4-hydroxybenzoate 3-monooxygenase [NAD(P)H]
1.14.13.4 melilotate 3-monooxygenase
1.14.13.40 anthraniloyl-CoA monooxygenase
1.14.13.5 imidazoleacetate 4-monooxygenase
1.14.13.6 orcinol 2-monooxygenase
1.14.13.63 3-hydroxyphenylacetate 6-hydroxylase
1.14.13.64 4-hydroxybenzoate 1-hydroxylase
1.14.13.7 phenol 2-monooxygenase
1.14.13.8 dimethylaniline monooxygenase (N-oxide-forming)
1.14.13.9 kynurenine 3-monooxygenase
1.14.99.21 Latia-luciferin monooxygenase (demethylating)
1.14.99.7 squalene monooxygenase
1.16.1.3 aquacobalamin reductase
1.16.1.4 cob(II)alamin reductase
1.16.1.5 aquacobalamin reductase (NADPH)
1.16.1.6 cyanocobalamin reductase (cyanide-eliminating)
1.17.1.5 nicotinate dehydrogenase
1.17.3.2 xanthine oxidase
1.17.99.1 4-cresol dehydrogenase (hydroxylating)
1.18.1.1 rubredoxin-NAD+ reductase
1.18.1.2 ferredoxin-NADP+ reductase
1.1.1.158 UDP-N-acetylmuramate dehydrogenase
1.1.2.4 D-lactate dehydrogenase (cytochrome)
1.1.3.10 pyranose oxidase
1.1.3.12 pyridoxine 4-oxidase
1.1.3.13 alcohol oxidase
1.1.3.17 choline oxidase
1.1.3.19 4-hydroxymandelate oxidase
1.1.3.21 glycerol-3-phosphate oxidase
1.1.3.23 thiamine oxidase
1.1.3.24 L-galactonolactone oxidase
1.1.3.3 malate oxidase
1.1.3.37 D-arabinono-1,4-lactone oxidase
1.1.3.38 vanillyl-alcohol oxidase
1.1.3.4 glucose oxidase
1.1.3.8 L-gulonolactone oxidase
1.1.99.10 glucose dehydrogenase (acceptor)
1.1.99.13 glucoside 3-dehydrogenase
1.1.99.16 malate dehydrogenase (acceptor)
1.1.99.18 cellobiose dehydrogenase (acceptor)
1.1.99.21 D-sorbitol dehydrogenase (acceptor)
1.1.99.3 gluconate 2-dehydrogenase (acceptor)
1.1.99.4 dehydrogluconate dehydrogenase
1.1.99.6 D-2-hydroxy-acid dehydrogenase
1.1.99.9 pyridoxine 5-dehydrogenase
1.21.99.1 beta-cyclopiazonate dehydrogenase
1.2.1.36 retinal dehydrogenase
1.2.1.58 phenylglyoxylate dehydrogenase (acylating)
1.2.2.2 pyruvate dehydrogenase (cytochrome)
1.2.3.1 aldehyde oxidase
1.2.3.3 pyruvate oxidase
1.2.3.4 oxalate oxidase
1.2.3.6 pyruvate oxidase (CoA-acetylating)
1.2.3.7 indole-3-acetaldehyde oxidase
1.3.1.14 orotate reductase (NADH)
1.3.1.15 orotate reductase (NADPH)
1.3.1.31 2-enoate reductase
1.3.1.52 2-methyl-branched-chain-enoyl-CoA reductase
1.3.3.1 dihydroorotate oxidase
1.3.3.2 lathosterol oxidase
1.3.3.6 acyl-CoA oxidase
1.3.5.1 succinate dehydrogenase (ubiquinone)
1.3.99.1 succinate dehydrogenase
1.3.99.10 isovaleryl-CoA dehydrogenase
1.3.99.13 long-chain-acyl-CoA dehydrogenase
1.3.99.2 butyryl-CoA dehydrogenase
1.3.99.3 acyl-CoA dehydrogenase
1.3.99.7 glutaryl-CoA dehydrogenase
1.4.1.13 glutamate synthase (NADPH)
1.4.3.1 D-aspartate oxidase
1.4.3.10 putrescine oxidase
1.4.3.11 L-glutamate oxidase
1.4.3.12 cyclohexylamine oxidase
1.4.3.15 D-glutamate(D-aspartate) oxidase
1.4.3.16 L-aspartate oxidase
1.4.3.2 L-amino-acid oxidase
1.4.3.3 D-amino-acid oxidase
1.4.3.4 amine oxidase (flavin-containing)
1.4.7.1 glutamate synthase (ferredoxin)
1.4.99.1 D-amino-acid dehydrogenase
1.5.1.20 methylenetetrahydrofolate reductase (NADPH)
1.5.3.1 sarcosine oxidase
1.5.3.10 dimethylglycine oxidase
1.5.3.11 polyamine oxidase
1.5.3.2 N-methyl-L-amino-acid oxidase
1.5.3.5 (S)-6-hydroxynicotine oxidase
1.5.3.6 (R)-6-hydroxynicotine oxidase
1.5.5.1 electron-transferring-flavoprotein dehydrogenase
1.5.99.2 dimethylglycine dehydrogenase
1.5.99.6 spermidine dehydrogenase
1.5.99.8 proline dehydrogenase
1.6.1.1 NAD(P)+ transhydrogenase (B-specific)
1.6.2.2 cytochrome-b5 reductase
1.6.2.4 NADPH-hemoprotein reductase
1.6.2.5 NADPH-cytochrome-c2 reductase
1.6.5.2 Transferred to 1.6.99.2
1.6.5.3 NADH dehydrogenase (ubiquinone)
1.6.99.1 NADPH dehydrogenase
1.6.99.3 NADH dehydrogenase
1.6.99.6 NADPH dehydrogenase (quinone)
1.7.1.1 nitrate reductase (NADH)
1.7.1.2 nitrate reductase [NAD(P)H]
1.7.1.3 nitrate reductase (NADPH)
1.7.1.4 nitrite reductase [NAD(P)H]
1.7.2.1 nitrite reductase (NO-forming)
1.7.99.1 hydroxylamine reductase
1.8.1.10 CoA-glutathione reductase
1.8.1.12 trypanothione-disulfide reductase
1.8.1.2 sulfite reductase (NADPH)
1.8.1.4 dihydrolipoyl dehydrogenase
1.8.1.7 glutathione-disulfide reductase
1.8.1.9 thioredoxin-disulfide reductase
1.8.3.3 glutathione oxidase
1.8.99.2 adenylyl-sulfate reductase
2.1.1.13 methionine synthase
2.1.1.148 thymidylate synthase (FAD)
2.1.1.74 methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase  (FADH2-oxidizing)
2.2.1.6 acetolactate synthase
2.7.7.2 FMN adenylyltransferase
3.6.1.18 FAD diphosphatase
4.1.1.47 tartronate-semialdehyde synthase
4.1.99.3 deoxyribodipyrimidine photo-lyase
4.6.1.15 FAD-AMP lyase (cyclizing)

6.1.1.16 cysteine-tRNA ligase

1.12.98.2 5,10-methenyltetrahydromethanopterin hydrogenase
1.5.99.9 methylenetetrahydromethanopterin dehydrogenase
3.5.4.27 methenyltetrahydromethanopterin cyclohydrolase

2.1.1.148 thymidylate synthase (FAD)
2.1.1.74 methylenetetrahydrofolate-tRNA-(uracil-5-)-methyltransferase  (FADH2-oxidizing)

1.12.98.2 5,10-methenyltetrahydromethanopterin hydrogenase
1.5.99.11 5,10-methylenetetrahydromethanopterin reductase
1.5.99.9 methylenetetrahydromethanopterin dehydrogenase

1.3.1.37 cis-2-enoyl-CoA reductase (NADPH)
1.3.1.38 trans-2-enoyl-CoA reductase (NADPH)
1.3.1.44 trans-2-enoyl-CoA reductase (NAD+)
1.3.1.8 acyl-CoA dehydrogenase (NADP+)
1.3.3.6 acyl-CoA oxidase
1.3.99.13 long-chain-acyl-CoA dehydrogenase
1.3.99.3 acyl-CoA dehydrogenase
2.3.1.104 1-alkenylglycerophosphocholine O-acyltransferase
2.3.1.111 mycocerosate synthase
2.3.1.121 1-alkenylglycerophosphoethanolamine O-acyltransferase
2.3.1.125 1-alkyl-2-acetylglycerol O-acyltransferase
2.3.1.13 glycine N-acyltransferase
2.3.1.15 glycerol-3-phosphate O-acyltransferase
2.3.1.16 acetyl-CoA C-acyltransferase
2.3.1.20 diacylglycerol O-acyltransferase
2.3.1.22 2-acylglycerol O-acyltransferase
2.3.1.23 1-acylglycerophosphocholine O-acyltransferase
2.3.1.24 sphingosine N-acyltransferase
2.3.1.25 plasmalogen synthase
2.3.1.26 sterol O-acyltransferase
2.3.1.42 glycerone-phosphate O-acyltransferase
2.3.1.51 1-acylglycerol-3-phosphate O-acyltransferase
2.3.1.52 2-acylglycerol-3-phosphate O-acyltransferase
2.3.1.62 2-acylglycerophosphocholine O-acyltransferase
2.3.1.63 1-alkylglycerophosphocholine O-acyltransferase
2.3.1.68 glutamine N-acyltransferase
2.3.1.75 long-chain-alcohol O-fatty-acyltransferase
2.3.1.76 retinol O-fatty-acyltransferase
2.8.3.8 acetate CoA-transferase
3.1.2.18 ADP-dependent short-chain-acyl-CoA hydrolase
3.1.2.19 ADP-dependent medium-chain-acyl-CoA hydrolase
3.1.2.20 acyl-CoA hydrolase
6.2.1.10 acid-CoA ligase (GDP-forming)
6.2.1.2 butyrate-CoA ligase
6.2.1.3 long-chain-fatty-acid-CoA ligase